Thanks! flickering was a bit tricky to deal with since I'm constantly slowing the shutter between shots to keep the metering centered. That and a tiny bit of wind exaggerates the flaws even more.
I shot it using jpeg small, so that means when all the photos are put in an image sequence its a huge high resolution movie file where I can zoom and pan in Adobe Premiere without losing image quality.
You should try using LRTimelapse (if you use Lightroom for PP?) does a wonderful job of de-flickering. The free version will let you process up to 400 frames each time.