I don't know what body you have, but if it is one that is compatible with Magic Lantern then you might want to consider installing and using ML. ML has a Dottune module which will automate running the Dottune MFA method. It runs the test multiple times, and averages the result for you. The default is four runs, but you can set it to do from 1 to 10 runs. The other advantage of using ML is that it offers an expanded range of MFA adjustment values. Instead of the usual +-20 range you get with the stock Canon software, ML covers a range of +-100. Running the test is really easy too. Simply mount the camera on a tripod, or secure it so that it cannot move. Switch your lens to MF and using Liveview ×10 manually focus the test target. Then simply run the Dottune test from the ML menu. Wait a few minutes while the test runs, and ML even sets the correct average value for the lens. You do have to enable the Dottune module in the modules section of the ML menu before you can use it. It is so simple to use, that as long as you can find a flat surface with some decent contrast on it (a road sign would be excellent for example) you can run a Dottune on location before your shoot. I was playing with my Sigma 150-600 on my 50D at the weekend, and I had a few issues with consistency when using it at practically MFD (9.2') and at 400/600mm, but I think that was more to do with my target than the system itself. When I moved back to 20' to run that series it seemed to work really reliably every time. I used the default 4 runs per test, but repeated them five times. I was doing the tests at the distances/focal lengths that Sigma use for the 16 point MFA using the dock. I didn't get the time to finish the whole series of tests, add them to the lens with the dock, and retest. For the Sigma 150-600 C the MFA combinations are 150mm, 250mm, 400mm, and 600mm at 9.2', 20', 40' and infinity.
Alan