OK, so I understand that it's technically impossible for DPP to display the focus points on the image (after any shot is recomposed, or after a fast-moving subject has shifted between focus lock and the image imprint).
I'll ignore the option to view the focus points in DPP from now on. I asked the original question because I thought the intent of the display was to show where the focus points were on the pic, but now I understand that they could just as easily have had a text caption saying which sensors were active, rather that overlaying them on the image itself - as that display is not valid for most of my portrait shots (due to recomposition with locked focus on the eyes)
Thanks all, for confirming that I wasn't missing anything here, and it's just a technical restriction that I should be aware of if I display the AF points on the pics.
Here's one example, where I focused on my daughter's right eye (she's on the right hand side of the pic), and where DPP shows the AF points. You can see that I had the center focus point active (and none of the other points were in the right place for me, without recomposing, so I use the more accurate center point of the 50D).

In my view, DPP should not overlay the AF points on the image, as they are meaningless for these types of photos.