Something tells me there is going to be a difference in the 1D X sensor. The general theory was that Canon 'crippled' the 5D2 to protect sales of 1Ds3 bodies. Since the 5D body will no longer have the 'crippled' AF I would expect there to be some difference in IQ.
The 5d3 will stay at the same high resolution.
I can see the 1Dx gaining an f-stop from the lower resolution (easily) and another f-stop from more expensive and/or newer processes when making the sensor (less convincing but possible). Another f-stop from improved NR software (in the eye of those who sell the camera, of course) and there is your 3 f-stops.



