I feel the same. This is what the manuals states.
I did a test with my 100L macro 2.8 IS and had different results at 8, 10 and 12 feet. As much of pain it is I also send my lenses to Canon to serviced by trained technicians who have the correct tools. Apparently there are multiple measurements on any lens when tuning them.
Even this does not recommend test rulers or targets and re-inforces to shoot at the distance you normally shoot.
http://www.learn.usa.canon.com …oadjustment_article.shtml
If you read Chuck Westfall's take on this this is the last paragraph of the precautions. When Canon comes up with a proven official procedure then I will take a look at it again.
Last but not least, there is no "official" Canon method for setting AF microadjustments, so this procedure is unofficial. If you think you can do better, then by all means, go for it. Towards that end, be advised that some independently made tools are designed to help you set AF microadjustments accurately. One of these is the LensAlign kit, due out soon from RawWorkflow.com:There is a thread here about a person who developed software to do this. Still a Beta but I will keep my eye on it.