You talk of the swallows, which I try and take inflight every year as I know a place where the congregate and hunt bugs low to the ground. I only use center point on my 1DMkII, and use a 100-400, usually at 400 or 375 and set and locked. Out of probably 500 shots or so I probably have only 10-15 that I would call clear. For the 1st few years I shot them I had my shutter speed down at only 1/1200, and it just wasn't fast enough. 1/1600 seems to work much better, then again I have been experimenting with zone focusing, where I pick a spot the birds will be going by and shooting when they come past, and I get fair amount of shots in that way as well. The 100-400 has a pretty hard time keeping up, which is why I tried the "zone" focusing as well.
The shots that aren't keepers but I can see detail show an amazing amount of maneuverability, just inches above the ground. I hope to one day find a combination of lens and camera that can shoot these little acrobats with some reliability.
I'm thinking maybe 5dIII or 1DMKIV at this point, once I can afford it, but I doubt that 100-400 will be able to keep up, so maybe a different lens as well.
Not many eagles here, wish there were, but for now the swallows are a blast to try and get images of.