How does crop factor make macro easier? If anything I'd say the reverse was true. Working distance is the same; maximum magnification is the same at 1:1 (for the OP's 100/2.8); all that changes is that a larger field is captured by the FF, and I don't see that as a disadvantge.
At 1:1, a camera with higher pixel density will place more pixels on the subject. That is one of the main advantages of crops for macro. The larger FOV of FF is not helpful, since the increase in FOV is outside the subject (assuming the subject fits within a crop sensor dimensions). Second, at longer distances, reach matters in macro as in anything else. If you want to fill the frame with a subject, you can be farther away with a crop.
I shoot more macro than anything else, and I own both formats. IMHO, 1:1 macro is one of two uses for which the crop is superior. The other, of course, is anything where you need reach, e.g., wildlife. I prefer FF for other things, e.g., low-light shooting.
OP: Amfoto makes some good points (as always). FF is better for some people, not for others. It's not clear from your post what is better for you. I would just add one caution: if you are comparing a 6D to a 70D or 7D, the 6D will give you a much inferior AF system. Doesn't matter much for macro, but it might matter for you for sports.