The MkII focus issues have been reported since the camera first came out. Most found them not up to the same standards as their old 1D models. They were long before the announcement of the N.
However, when the N came out and people started saying that it seemed to fix the MkII issues and was more like the original 1D, things got even more vocal about the issues as now apparently there was "proof." Folks that had no 1D issues, then had MkII issues, now had no issues again on the N.
I dont know, hard to say. I never really noticed any issues with my MkII after using my original 1D, however, now using my N, it seems that focus is a little more spot on than with my old MkII.
I guess we'll only see if Canon makes it known or starts to fix affected models.