Mine also behaves just like your with the lens cap on. I wouldn't worry about it. Especially since you have a 2 year warranty.
Thanks! Good to know this behaviour is normal.
The lens has some built-in logic which assumes 'normal' user behavior.
Unknowingly, you seem to have violated a whole bunch of assumptions of what Canon considers 'normal' (IS on, distance switch positioned appropriately, shooting with the cap off).
Contrary to what you 'believe', I believe that a $2400 lens should be designed to provide the best performance under 'real world' circumstances... with the cap off!
In my book this means keeping one of the best implemented IS applications 'on' AND sharing with the lens the secret that my subject is more than 3 meters away. Always with the cap off
.Did I mention that I prefer taking pictures with the cap OFF?
Now, I'd suggest, if I may, that you take this marvelous lens and go out in the real world, in the first available opportunity and shoot anything that moves or doesn't. Give it a chance to astound you!
Enjoy!
Haha I know no one likes the fact I had the lens cap on, but I didn't have the time (had to go to bed early) to take a video of the lens focusing on an actual subject (or trying to, at least). The lens with the cap on and then off and focusing on a low-contrast target exhibited the same behaviour, thus I decided to just make a video of the lens with the cap on (saves time getting the other tripod out etc) to demonstrate this behaviour.
I know of the newer TC's slowing down AF to improve accuracy, but I did not know Canon had implemented this idea into their lens(es). Now I know (and others in the future), thanks!

