Personally I would not bother, I don't use the AF confirm at all with the MP-E 65mm or any other macro lens, just judge it off the standard issue focus screen.
I used to use a reversed 28mm lens in my film days, my memory was this was hard to use with very limited working distance and that was with an auto-stop-down cable release, if you are trying to focus stopped down that will make it much harder. I don't know how much magnification you are getting but I would guess about 3:1.
If you can afford it look into the MP-E 65mm, it is a breeze to use in the field even giving 1:1 to 5:1. Alternatively get a ~65mm stack of tubes to use with your 100mm, this will give about 2:!.