As both gonzogolf and dmward pointed out the trigger system is a significant differentiator. The YN-600 EX-RT has a built in trigger that is compatible with the top end Canon 600EX-RT. The Yn 568 Ex II does not have a built in radio, but does have optical triggering. This brings you to the point of picking a radio system. The radio trigger system is a major element in the Flash equation.
There are multiple RF triggers available that will work with the Yn 568 Ex II.
Pick a system that meets your requirements now and allows for some growth.
There are pluses and minuses on both side of this, so this needs some thought, unless you have
crazy dollars to do it multiple times.
Hope this helps,
110yd