They don't tell you exactly how it works, since they consider their evaluative metering algorithm to be proprietary, and as such a trade secret.
A long time ago, when evaluative metering was introduced, Canon claimed that the camera executed a pattern recognition algorithm among the metering zones. They typically had eight zones back then, so not too much to match, but the processors were slower too.
Then they compared that to samples stored in the camera, picked the closest one, checked the exposure setting for that one and used that.
Example: Say that the camera finds a nominal exposure of 1/125 and f/8 to be correct. The evaluative three-zone metering system (just invented for this example) considers the zones to be at levels 0, +1.1 and -2.1. Zero means it's correctly exposed at 1/125 and f/8. In the camera's database, there's an image with 0, +1 and -2. This is close, so the camera checks exposure info for this image and finds that an underexposure of 0.4 gave the best result.
So the camera decides to reduce the exposure, compared to 1/125 with f/8, with 0.4 stops. To you, it will indicate 1/160 f/8, as the display doesn't have more granularity than 1/3 of a stop, but internally it will use 1/172 s, to hit as close as possible.
If they do this in the same way today, when we have 252 metering zones in a 1DX, and Intelligent subject analyzis on top of that, I don't know.
I've found that when I feel the need to resort to spot metering, I frequently also find the need to measure at more than one point. That's also a feature that's available only in the 1D-series. The first camera I had supporting it was the T90, but back then, evaluative metering wasn't introduced yet, so multi-spot was the manual predecessor of evaluative mode.
Anyway, this means that to me, spot metering is frequently a pretty slow way of working anyway, so whether the spot metering is linked to an AF point or not doesn't mean a thing. It's rather easier to have it at the center, so I know where to aim. The multi-spot metering is a process that's better done completely separated from focusing anyway.
I don't know about the rest of you? Do you frequently use a single spot for metering? Don't you get fooled by a small part of the subject having a very great impact then?