Auto-ISO is a completely different beast depending on other settings. It would never prefer a specific ISO setting in M mode; you would simply have total freedom over the range from ISO 100 to whatever the max is for, or getting stuck at those two extremes. When you start automating other things, then the camera may have its own taste in exposure, or follow your set rules, and could possibly result in one ISO more often than others.
Any ideas that people had of auto-ISO that they got from auto-ISO in full-auto, P, Av, or Tv mode need to be forgotten for M mode. In M mode, it never affects absolute exposure like it can when the camera also automates another parameter. In M mode, the only way auto-ISO can cause extra noise in M is if you use a negative "EC" biased towards a darker image at a lower ISO), which can increase some parts of the read noise, but that varies noise less than getting less absolute exposure does.
I don't really think about ISOs much when I am shooting, because I know that my choice of shutter speed is usually the only major variable in noise when I am already as close as I can get to a subject with a given lens.
On the 7D2 I use auto-ISO almost exclusively, in M. Yes it does tend to float to 6400 (my upper limit) but that's by design; I'm maximizing my shutter speed to push it up there but also allow it to compensate for brighter areas of the gym or field. If it wasn't pushing 6400 most of the time I'd often react by going faster on the shutter, as I usually have a shutter speed that I feel is too slow. Not the case in daylight, but daylight is sort of an occasional luxury for me. Dark gyms and field lights are more common.
Unless I am trying to deliberately over- or under-expose a scene, which I practically never do, I just let the camera work it out with auto-ISO. With RAWs I have enough range to correct as needed in post.
Good information, and interesting stance on the subject. Thank you, both !


