To crop a picture taken with a 200 mm lens to be the same as one taken with a 400 mm lens you would only use 1/2 of the height and 1/2 of the width of the total frame. That means you are only using 1/4 of the total area of the frame. If you started our with 16 mp and only used 1/4 of the frame you would end up with a 4 mp image. You would expect the resolution of the 400 mm on the 8 mp camera to be better because it has 8 mp compared to the 4 mp of the cropped image.
Incidentally, going from 8 mp to 16 mp does not double the resolution. Resolution is measured in line pairs per mm in the vertical, horizontal or diagonal direction. To double resolution you have to double it in both horizontal and vertical directions, so you need 4 times as many pixels. It would take a 32 mp camera to have double the resolution of an 8 mp camera. That is why as more and more pixels get packed onto sensors we see less and less improvement in resolution with each increase.