To restate Jman's points in a slightly different way, for added clarity...
The 100mm f/2 max aperture lens with 1.4x convertor is truly an f/2.8 max aperture. But the camera erroneously displays it as an f/2 lens
The sensor sees less light with the f/2.8 lens than with an f/2 lens, so its meter is registering less light. So, for a given aperture (reported as f/2) in Av mode it would choose a slower shutter speed than it other wise might. So the meter compensates for the aperture number lie, by virtue of it seeing less light coming thru the lens.
For example, ISO100 1/100 sec. f/16 is the true amount of light on the scene.
With the 100 f/2 lens alone, the meter registers ISO100 1/100 sec. f/16 and thinks it has an f/2 lens in place.
With the 100 f/2 lens with 1.4x, the meter registers ISO100 1/50 sec. f/16 and thinks it has an f/2 lens in place. What it THINKS is f/16 is truly f/22, but the amount of light it sees is -1EV, so it says '1/50' with the pseudo f/16 (truly f/22) and that results in the proper exposure for the scene!