InTheDeck, I would support your suggestion of Radiopoppers. The E-TTL system works very well, particularly where on-the-fly, uncontrolled circumstances apply, but the infra-red transport system for the two-way messaging between camera and flashes is very weak. The radioPoppers add a radio link to that stream, and increase the range and operability of the IR link.
However, it would be good to obtain mastery of the whole flash system, and to do this i would suggest that you read The Strobist Lighting 102 tutorials and do the exercises, using low-cost triggers. It sounds fiddly and pricey, but once you have the gear, you will realise that your fears are groundless. And, you will have a backup system to the RadioPopper/E-TTL system.
The best of both worlds is to have both worlds!