OK... for two weeks I have been having intermittent problems with CR2 files that appear corrupt or will not decode to JPG format in Digital Photo Professional.
I have finally replicated the error in as small of a test scenario as possible. Any help or suggestions as to how I can pin down the root cause would be TREMENDOUSLY appreciated!
1. I shot 314 files in RAW format on a 2 month old Sandisk Ultra II card. The card was formatted in-camera before the shoot.
2. I copied the CR2 files to a new directory on a brand new and freshly formatted internal hard drive.
3. I opened DPP and instructed it to batch process all of the files to JPG format on the same drive in a new directory.
4. DPP gave me 6 "Decoding Failed" errors.
5. The CR2 files in question open with no errors in DPP as well as Photoshop with ONE exception.
6. The one exception will not open in either program and is described as being corrupt.
7. I had to re-copy the one exception from the memory card to the hard drive and then it worked perfectly.
8. A second attempt to individually batch process each of the CR2 files in question produces no errors.
9. HOWEVER. Many of the JPG files that appeared to process correctly actually are garbled and missing data when viewed.
Personally, the only conclusion that I can come to is that DPP is the cause of the problem. However, for all of 2008, we followed the same workflow and did not encounter ANY of these errors. They just started creeping up in the last two weeks. Before anyone asks, yes, I did uninstall and re-install DPP.
Help?

