Well, my 20D has done around 80,000 shots and is just as sharp now as when I bought it, so you shouldn't be seeing a difference after a few hundred unless the camera has been damaged.
To be honest, you can't directly compare just two images and come up with any meaningful answer. When shooting animals I will often shoot a sequence and the sharpness will vary slightly between images, for a number of reasons.
Are ALL your shots coming out as soft as that, now ?
I would hazard a guess that those two you show may be largely lit by ambient light. I know you used a flash but there isn't the sort of hard-edged shadows I would expect from that. Of course, you may have bounced the flash or used a softbox in which case ignore this.
If the ambient was brighter than the flash, and the flash was merely 'fill-in' (through being too low on manual, or by having FEC set to reduce the power) then the shutter speed of 1/60 was too slow and would leave you prone to camera shake. You may have been lucky on the first one, but moved slightly on the later shot.
Alternatively, you could have locked focus, then rocked backwards / forwards slightly making the image a little soft due to misfocusing.
There are numerous reasons that could be behind a soft result, if you are getting nothing sharp then there may be a problem. However if some shots are sharp, some soft, then it is probably user error. I don't mean that as a criticism, we all get some soft shots.
Try the camera outside where you can get a good shutter speed and stop the aperture down a couple of stops, to minimse the effect of slight misfocusing, then take a number of shots. If these are all soft, you may well have a problem with the camera, if most / all are sharp then it comes down to an error of some sort on that shot of the dog.