Focusing is not always a slam dunk. I have a tall church steeple over a mile away that none of my lenses can reliably focus on. It looks like a thick hair in the center focus point. With the distance and the fact that the target is relatively small, the focusing error is just too great. The AF misses but just slightly. Easily noticeable when pixel peeping at 100%.
I also have a building right accross the street. If I focus on the concrete balconies (they have verticle expansion joints), the same thing. All my lenses are a bit off with that target.
After awhile, when you get the odd OOF image, you learn what works and, more importantly, what may give trouble to the AF system.