How did you evaluate exposure in C1?
Using the middle gray patch, and exposing the image so the RGB values are as close to 128 as possible
Then are you reading the gray scale squares along the bottom of the Passport?
Yep.
If so, are you confirming the RGB readings based on the color space you are using in C1?
I'm using sRGB.
Remember, Strobe the aperture is the only camera variable. With Ambient shutter is an added variable.
I think this may be it! I wasn't considering the shutter as an additional variable. 
And then there is the probability that the meter is not spot on either. So now we have three veriables.
I was thinking that if the meter's not spot on, that the degree of error would be consistent...but the shutter!
And since the modeling light is 2700K and the strobe is ~5600K did you do a white balance adjustment before or after doing the exposure check?
I did a white balance adjustment, in both cases, before exposure check.
I
would consider 1/3 variation in two meter reading to be within the normal margin of error. That's why I tend to take three readings in succession and average them.
This sounds like a very good idea!
Then use the histogram to check for placement of the white square on the passport for final confirmation that I am not going to blow highlights while keeping maximum SNR headroom in the shadows.
As does this. Thank you. 