Thanks Clarence, thats very good to know, I think I'd best stick to ETTL then?
I was going to answer, but Kevin already beat me to it...
I would recommend still shooting with manual flash. There are lots of things that can throw off the ETTL settings when you are covering moving objects of various colors. Once you get it dialed in, the manual settings will give you good consistency from shot to shot.
If you're fairly consistent with your setup from shot to shot, it's a lot easier and predictable to control the flash level manually.
I know you have a lot of good options to try above... ETTL vs M, on-camera vs off-camera, single vs multi-speedlights... but I'll throw in one more... I think you're close enough to try HSS (high-speed sync)... this pulses the flash and lets your shutter speed control the exposure. Also works great if you squeeze off 2-3 bursts in rapid fire mode while you're panning.
But I think you'll find that with fast dogs, you're better off decreasing the ambient exposure to remove ghosting and then adjusting flash level manually... the lower you can go the better (less of a harsh flash look, shorter flash duration to better freeze motion, quicker recycle time, and longer battery life).

