While you are panning (shutter is open, image recorded, viewfinder black) the camera will not change focus, so it doesn't matter how you focus. But I assume you are tracking the subject and taking multiple shots, panning each of them. In that case it may be beneficiary to update the focus setting between shots.
To do that you have to have Servo AF selected. If you use One shot AF, the camera will focus only once, and then keep the same distance setting as long as you keep the shutter button half pressed.
When using Servo AF, you have to either select one single AF point and maintain that on the target, or use all nine points at the same time. If you go for the second alternative, note that you always have to start acquiring focus with the center point. But if you do loose contact with the subject with the center point, and the camera then can determine that one of the other points still is in focus, it will hand over focus tracking to that point. If no other point is in focus within a certain time interval (which cannot be set on a camera like the 400D, but will remain fixed at about 0.5 seconds), the camera will attempt to re-acquire focus with the center point.
When you are tracking with multiple points, the camera may very well find something else than what you intended to focus on. In such cases, using one point is better, but it will require that you keep that point on the target.
This
is a typical case, where the camera wanted to focus on the high-contrast commercial signs in the background, instead of on the runners.
In such cases, I recommend that you remove focus from the trigger button, but instead focus with your thumb. On the 400D, this means using the * button for focus. By doing like that, you can temporarily stop focusing, if you realize that for a certain time, the camera may just be confused, so it's better to just keep the current focus setting, or focus manually if your lens allows that. Takes some practice, but works better once you've learned it.
It also helps in situations like this one
, where there are trees both in front of and behind the runner. Being able to control when to have servo focus active or not helps in such cases, especially with cameras lacking the more advanced modifications to the servo AF algorithms that are possible only with the 7D and other cameras in the 1D series.