There is no problem. It's all electronic and computer-controlled --the camera would obey the last setting, whichever control was used. The camera is never "trying to set the aperture" while you're operating the aperture control--it doesn't do it now, it would not do it if the aperture control were on the lens (or on the camera around the mount).
How do you think the camera knows even now what the maximum and minimum apertures are on the lens? The camera interrogates the lens when it's first mounted. Have you ever set the lens to the maximum aperture with a variable aperture zoom and watched the camera adjust the aperture as you zoom? The lens is constantly communicating its maximum aperture to the camera as it varies while it zooms. If the aperture control were on the lens, the lens would merely inform the camera whenever it was changed...the same way the camera controls do now.
That's what those contacts are for, and one of them already conveys aperture information. It's no big technical feat to have the camera read a control from the front just as it currently reads controls on the top and on the back.

