Don't get scared or be uncomfortable, and certainly don't look like you are as it attracts even more attention (even if it's only your perceptions).
Shoot away and don't get in anybody's way. If you need some distance from people once in a while, frame the subjects in portrait orientation against the tall buildings on the side or bring the sky into the top of the frame.
I like my 85mm as it gives some more reach and works well in late afternoon light and even sometimes a 10-22 when walking around in crowds, so how you shoot the public in public doesn't always have to look the same as everyone else.
As for the street shooting ethics and photojournalism, I always think back to the 2001 documentary 'War Photographer' about James Nachtwey. He talks about how he blends in, doesn't draw attention to himself and shoots what's important to share with the world. At the same time, he acknowledges most civilian victims of war and atrocities innately understand the reason he's there as the situation is newsworthy, human and extreme. For that reason, I think it's important to be considerate when out on the streets at home; while there's no legal reason not to be there, everybody is just going about their general business and have a reasonable expectation not to be harrassed.
I think it's good that you're concerned. I think you should keep doing what you're doing if you enjoy it.
I like making photos and sometimes I think I'm getting better... then I realise it doesn't matter. I like making photos!