Scub,
Does it only happen when your shutter speed is really high, say 1/4000 or higher?
nope
Humour me, turn the camera on in Av mode and and look through the viewfinder. What does your meter read?
It's centered in the middle at +0
scubthebub
Use M mode, meter using spot meter on an object. Make sure the needle is set to the center and take a pic.
Switch to AV, spot meter on the same object. Do you get the same reading? If the meter in your viewfinder underexposed by 1?
I think Geno and I are on the same page...
5D+24-105L in M at ISO100 it metered at f/4 1/1000
5D+24-105L in Av at ISO100 set to f/4 it metered at 1/1000
Here are a couple of examples of what i'm seeing and talking about.

















